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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_22384966_22386127_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22384966 - 22386127
Intron Length:
1162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGGTGA
5'SS Class:
major
3'SS Sequence:
CTCAATTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CATATCTCAATT
Flanking Amino Acid:
LQELLVVNKKKDGQYFLKVL
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
65.5
36.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.6
0.67
0.9
76.3
37.3
Minor 5ss
32.4
-2
3.3
37.6
41.6
Minor BPS
56
0.27
1.6
69.74
41.4

Associated Gene:

Gene:
NOVA1
Ensembl Gene ID:
ENSAPLG00000008154
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019344
22384315 - 22522859
138545