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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_22386272_22393739_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
22386272 - 22393739
Intron Length:
7468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTGCATCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TTTTCCGTCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.2
34.9
Major BPS
76.2
0.65
1
67
39.8
Major PPT
72.9
0.52
0.9
65.8
35.6
Minor 5ss
31.9
-2.1
3.3
41.7
44.9
Minor BPS
59.5
0.38
2.4
87.41
38.9

Associated Gene:

Gene:
NOVA1
Ensembl Gene ID:
ENSAPLG00000008154
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043808
22386128 - 22522237
136110