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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2241634_2250675_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2241634 - 2250675
Intron Length:
9042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
AAAAATCGTGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AAAAAATAAACA
Flanking Amino Acid:
LEENAYEDIVGESPKENPYE
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
48
-0.1
1.2
42.5
42.1
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
42.9
-0.5
2
51.55
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026289
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045801
2221791 - 2260181
38391