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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_22436333_22436961_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
22436333 - 22436961
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGATA
5'SS Class:
major
3'SS Sequence:
TATATATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTTATATATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
71.7
39.6
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
81.5
0.71
0.9
78.1
39.9
Minor 5ss
34.8
-1.7
3.4
48.8
47
Minor BPS
49.8
0.07
2
77.67
39

Associated Gene:

Gene:
NOVA1
Ensembl Gene ID:
ENSAPLG00000008154
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008460
22436248 - 22522237
85990