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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_22437033_22492401_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
22437033 - 22492401
Intron Length:
55369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGAAAT
5'SS Class:
major
3'SS Sequence:
TTATTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1
71.5
33
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.2
0.95
0.7
88.5
28.4
Minor 5ss
32.3
-2
3.1
46.4
43
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
NOVA1
Ensembl Gene ID:
ENSAPLG00000008154
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043808
22386128 - 22522237
136110
ENSAPLT00000042627
22386128 - 22522859
136732
ENSAPLT00000008460
22436248 - 22522237
85990
ENSAPLT00000045876
22393740 - 22522859
129120