About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_22492569_22503321_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22492569 - 22503321
Intron Length:
10753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TGCTCCTGAACT
Flanking Amino Acid:
TTVNPDRIKQTLPSSPTTTK
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
77.1
0.61
0.9
68.5
42.1
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
75.4
0.88
1.4
85.99
39.7

Associated Gene:

Gene:
NOVA1
Ensembl Gene ID:
ENSAPLG00000008154
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042627
22386128 - 22522859
136732
ENSAPLT00000035578
22393740 - 22522859
129120
ENSAPLT00000019344
22384315 - 22522859
138545
ENSAPLT00000045876
22393740 - 22522859
129120
ENSAPLT00000008460
22436248 - 22522237
85990
ENSAPLT00000043808
22386128 - 22522237
136110