Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_22503394_22521232_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22503394 - 22521232

Intron Length:

17839

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAGTAT

5'SS Class:

major

3'SS Sequence:

TTTTTAATTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATT

Flanking Amino Acid:

DPMTTSRANQVKIIVPNSTA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.1

69.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

87.5

0.84

0.8

81.9

33.4

Minor 5ss

36.7

-1.5

3.6

55.1

49.1

Minor BPS

84.9

1.17

0.8

94.97

24.6

Associated Gene:

Gene:

NOVA1

Ensembl Gene ID:

ENSAPLG00000008154

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035578

22393740 - 22522859

129120

ENSAPLT00000019344

22384315 - 22522859

138545

ENSAPLT00000045876

22393740 - 22522859

129120

ENSAPLT00000008460

22436248 - 22522237

85990

ENSAPLT00000043808

22386128 - 22522237

136110

ENSAPLT00000042627

22386128 - 22522859

136732