Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2256649_2259951_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2256649 - 2259951

Intron Length:

3303

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTGATCCGT

5'SS Class:

weak_major

3'SS Sequence:

TTTTTGATGCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTTTTTTTGATG

Flanking Amino Acid:

LRGTTRASWFTHTQRLVHIQ

Intron Amino Acid Position:

266

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.7

0.09

1.1

46.6

43.4

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

72.2

0.5

43.8

Minor 5ss

36.4

-1.5

3.2

53.2

44.6

Minor BPS

70.1

0.49

1.2

73.17

33.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026289

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045801

2221791 - 2260181

38391