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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_22593321_22601497_F

Intron Information:

Intron Rank:
149128
Intron Class:
major
Intron Phase:
Intron Coordinates:
22593321 - 22601497
Intron Length:
8177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTCTTTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AAATTCATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
86
0.81
0.6
80.7
31.3
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
64.1
0.52
1.6
77.63
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030189
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039897
22593245 - 22604093
10849