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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2275201_2292397_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2275201 - 2292397
Intron Length:
17197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTCTGCTCACAC
Flanking Amino Acid:
RRVIFVADKLSTLSSCSHAV
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
83.1
0.74
0.7
80.4
24.9
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
41.5
-0.6
2.2
51.17
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003498
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003618
2272109 - 2296569
24461