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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_22820866_22824271_F

Intron Information:

Intron Rank:
127479
Intron Class:
major
Intron Phase:
Intron Coordinates:
22820866 - 22824271
Intron Length:
3406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATTGTTTCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
96
1.03
0.5
92.7
17.1
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
51
0.11
1.7
71.21
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018749
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043361
22820680 - 22824405
3726