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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_22820866_22837884_F

Intron Information:

Intron Rank:
127471
Intron Class:
major
Intron Phase:
Intron Coordinates:
22820866 - 22837884
Intron Length:
17019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATCTTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
100
1.24
0.5
100
0
Major PPT
84.9
0.79
0.8
77.5
35.7
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
55.9
0.27
1.7
72.81
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018749
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031146
22819581 - 22843742
24162