Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_22835295_22837884_F

Intron Information:

Intron Rank:

127465

Intron Class:

major

Intron Phase:

Intron Coordinates:

22835295 - 22837884

Intron Length:

2590

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCATTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

ATCTTTTTCATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

77.6

32.8

Major BPS

100

1.24

0.5

100

Major PPT

84.9

0.79

0.8

77.5

35.7

Minor 5ss

30.6

-2.2

3.4

39.4

46.5

Minor BPS

55.9

0.27

1.7

72.81

39.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018749

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035837

22819581 - 22843742

24162

ENSAPLT00000021402

22824202 - 22843742

19541