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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_22911639_22912161_F

Intron Information:

Intron Rank:
125017
Intron Class:
major
Intron Phase:
Intron Coordinates:
22911639 - 22912161
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTCTACTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
79.7
35.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
86.2
0.81
0.6
85
22.5
Minor 5ss
49
-0.1
2.5
65.8
45.4
Minor BPS
68.7
0.57
1.6
76.85
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017316
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032673
22910588 - 22912311
1724