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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2293256_2294297_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2293256 - 2294297
Intron Length:
1042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
GTGATCTAAAGA
Flanking Amino Acid:
NLGSDRFIRQMDDEDTLLPR
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.4
33.3
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
80.7
0.69
0.9
81
31
Minor 5ss
36.4
-1.5
3.4
49.2
47.3
Minor BPS
46.5
-0.2
2
55.93
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003498
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003618
2272109 - 2296569
24461