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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2296109_2296534_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2296109 - 2296534
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGGACA
5'SS Class:
major
3'SS Sequence:
GTGTTTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
ATTCTAGTGACT
Flanking Amino Acid:
SGVNKFLRGLGNKMKFLHKK
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
68.7
37.5
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
79.4
0.66
0.8
77.9
36.6
Minor 5ss
27.6
-2.6
3
32.8
41.8
Minor BPS
46.5
-0.1
2.2
71.7
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003498
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003618
2272109 - 2296569
24461