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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_22967282_23000607_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
22967282 - 23000607
Intron Length:
33326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATCATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TAGTTCCTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
83.7
34.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.2
0.77
0.8
82.6
33.5
Minor 5ss
45.4
-0.5
2.9
66.6
44.4
Minor BPS
60.1
0.31
1.6
68.76
37.8

Associated Gene:

Gene:
STXBP6
Ensembl Gene ID:
ENSAPLG00000006792
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007050
22967055 - 23071638
104584