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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23000792_23051538_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23000792 - 23051538
Intron Length:
50747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTATATGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTTCTTTTATA
Flanking Amino Acid:
GEYLTYICLSVTNKKPAQAS
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
75.6
0.58
1
74.5
40.2
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
72.9
0.71
1.5
82.82
31.5

Associated Gene:

Gene:
STXBP6
Ensembl Gene ID:
ENSAPLG00000006792
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046082
22999755 - 23071221
71467
ENSAPLT00000031326
22999755 - 23066159
66405
ENSAPLT00000007050
22967055 - 23071638
104584