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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23051670_23053415_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23051670 - 23053415
Intron Length:
1746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TAAAACCGAAGT
Flanking Amino Acid:
RQVNGIDPNRDSPEFDLLFE
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.7
44.5
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
91.4
0.93
0.6
85.5
29.2
Minor 5ss
37.4
-1.4
3
42.1
44.4
Minor BPS
40.8
-0.6
2.1
58.3
43.3

Associated Gene:

Gene:
STXBP6
Ensembl Gene ID:
ENSAPLG00000006792
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007050
22967055 - 23071638
104584
ENSAPLT00000046082
22999755 - 23071221
71467
ENSAPLT00000031326
22999755 - 23066159
66405