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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2305263_2306407_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2305263 - 2306407
Intron Length:
1145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TTAATCTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
LAPVIDVVRSGYYKVLGKGK
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
77.9
0.63
0.9
70.3
40.9
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
RPL27A
Ensembl Gene ID:
ENSAPLG00000004088
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004186
2303638 - 2306536
2899