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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23118132_23118235_F

Intron Information:

Intron Rank:
143298
Intron Class:
major
Intron Phase:
Intron Coordinates:
23118132 - 23118235
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
GTTTCTCTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
83.3
0.75
0.7
77.6
24.3
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
70
0.61
1.6
80.02
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027192
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048128
23116437 - 23119474
3038
ENSAPLT00000042278
23116247 - 23119486
3240
ENSAPLT00000023499
23117729 - 23119486
1758