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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23174290_23187475_F

Intron Information:

Intron Rank:
126081
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
23174290 - 23187475
Intron Length:
13186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTAATCT
5'SS Class:
weak_major
3'SS Sequence:
TTTCCATACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
GTTTCCATACAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.3
61.1
38.4
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
74.8
0.56
0.9
69.5
34.8
Minor 5ss
41.4
-1
3
57.8
46.3
Minor BPS
52
0.04
2
69.76
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017931
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020108
23173964 - 23188843
14880