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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23194341_23213878_R

Intron Information:

Intron Rank:
146132
Intron Class:
major
Intron Phase:
Intron Coordinates:
23194341 - 23213878
Intron Length:
19538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
ACAAACTGATGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
89.5
0.89
0.6
89
20.1
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
37.6
-0.9
1.9
40.44
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026025
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029277
23194293 - 23214540
20248
ENSAPLT00000018317
23194293 - 23235522
41230