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Intron Name: Anas_platyrhynchos_platyrhynchos_5_23252875_23253198_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23252875 - 23253198

Intron Length:

324

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGGCA

5'SS Class:

strong_major

3'SS Sequence:

TTGTCTGTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTGAC

U12 Branch Point Sequence:

GCGCCCTGACCG

Flanking Amino Acid:

AVQQHSTMIGRILLTVVVIF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.3

0.93

0.9

75.8

33.8

Major BPS

56.5

0.16

1.1

48.6

36.6

Major PPT

0.72

0.9

76.8

37.3

Minor 5ss

29.5

-2.3

3.4

38.8

46.5

Minor BPS

45.9

-0.4

1.8

46.43

45.8

Associated Gene:

Gene:

GJD2

Ensembl Gene ID:

ENSAPLG00000009429

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009820

23252031 - 23253269

1239