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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2328181_2328797_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2328181 - 2328797
Intron Length:
617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGTAT
U12 Branch Point Sequence:
TCTTCCTCATAG
Flanking Amino Acid:
IQVSAKQIEDRLLEVKHLYK
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
87.2
27.3
Major BPS
63.7
0.34
1.4
63.7
43.9
Major PPT
77
0.61
0.7
72.2
26.1
Minor 5ss
38.7
-1.3
3.4
58.4
46.2
Minor BPS
49.8
-0.1
2
60.97
46.4

Associated Gene:

Gene:
TRIM66
Ensembl Gene ID:
ENSAPLG00000004186
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004312
2323318 - 2353991
30674