About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2328913_2329767_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2328913 - 2329767
Intron Length:
855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
ACATTATTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATTAT
U12 Branch Point Sequence:
ACATTATTAACA
Flanking Amino Acid:
RTNILLEQLEKITSERKQKL
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
63.3
0.33
1.1
54
41.2
Major PPT
68.4
0.41
1
62.9
41.5
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
61.8
0.37
1.6
67.52
38.5

Associated Gene:

Gene:
TRIM66
Ensembl Gene ID:
ENSAPLG00000004186
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004312
2323318 - 2353991
30674