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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23306149_23309225_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23306149 - 23309225
Intron Length:
3077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTATCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTCTATTATCC
Flanking Amino Acid:
MIQSTRHYQQRLLPPPAMTE
Intron Amino Acid Position:
1385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
77.9
31.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
80.8
0.69
0.9
73.5
40.7
Minor 5ss
30.5
-2.2
3.5
41.8
45.1
Minor BPS
55.8
0.16
1.9
72.83
37.8

Associated Gene:

Gene:
AQR
Ensembl Gene ID:
ENSAPLG00000008144
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034119
23305909 - 23360084
54176
ENSAPLT00000032745
23305909 - 23360084
54176
ENSAPLT00000008533
23305229 - 23360084
54856