Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23316226_23319032_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23316226 - 23319032

Intron Length:

2807

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCTAA

5'SS Class:

strong_major

3'SS Sequence:

TGGTTTTGGACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TCACCTTTAATT

Flanking Amino Acid:

DLDAQGRARASLCNLYNWRY

Intron Amino Acid Position:

1145

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.3

0.95

0.8

80.2

30.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

67.3

0.39

1.2

64.5

45.9

Minor 5ss

43.2

-0.8

2.9

55.3

48.9

Minor BPS

0.74

1.2

77.99

38.7

Associated Gene:

Gene:

AQR

Ensembl Gene ID:

ENSAPLG00000008144

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034119

23305909 - 23360084

54176

ENSAPLT00000032745

23305909 - 23360084

54176

ENSAPLT00000008533

23305229 - 23360084

54856