About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23322743_23323622_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23322743 - 23323622
Intron Length:
880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATGACA
5'SS Class:
major
3'SS Sequence:
TTTATTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTATTTTTATTT
Flanking Amino Acid:
RHDLVELGFKYDNILMEESA
Intron Amino Acid Position:
1059

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
67.9
36.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89
0.88
0.7
88.3
28.7
Minor 5ss
34.3
-1.8
3.1
41.4
38.9
Minor BPS
57.7
0.32
1.6
71.47
40.5

Associated Gene:

Gene:
AQR
Ensembl Gene ID:
ENSAPLG00000008144
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032745
23305909 - 23360084
54176
ENSAPLT00000008533
23305229 - 23360084
54856
ENSAPLT00000034119
23305909 - 23360084
54176