Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2332514_2342176_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2332514 - 2342176

Intron Length:

9663

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTTCTTTCC

5'SS Class:

weak_major

3'SS Sequence:

TTCCTTTCCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

AACTGATTAACA

Flanking Amino Acid:

QDESPVSSLKRSASLSIVGF

Intron Amino Acid Position:

543

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.3

0.08

1.2

54.6

37.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

83.1

0.74

0.7

76.4

32.2

Minor 5ss

38.5

-1.3

2.8

46.6

35.4

Minor BPS

51.9

0.05

64.22

41.8

Associated Gene:

Gene:

TRIM66

Ensembl Gene ID:

ENSAPLG00000004186

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004312

2323318 - 2353991

30674