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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23335100_23336369_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23335100 - 23336369
Intron Length:
1270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATCTCA
5'SS Class:
major
3'SS Sequence:
TTATTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTATATTATTT
Flanking Amino Acid:
DNPDLQVPPFRITFPIQGGK
Intron Amino Acid Position:
751

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
66.5
35.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
85.1
0.79
0.9
80
37.3
Minor 5ss
38.8
-1.3
2.9
48.4
47.2
Minor BPS
53.8
0.2
1.9
77.45
39.2

Associated Gene:

Gene:
AQR
Ensembl Gene ID:
ENSAPLG00000008144
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008533
23305229 - 23360084
54856
ENSAPLT00000034119
23305909 - 23360084
54176
ENSAPLT00000032745
23305909 - 23360084
54176