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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23337437_23337865_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23337437 - 23337865
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATGC
5'SS Class:
major
3'SS Sequence:
TCATTATGGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTAATTTTACT
Flanking Amino Acid:
LDEKGRVIEEGPEPKPRLKG
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
61.9
37.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
64.8
0.33
1.1
61.9
43.3
Minor 5ss
43.7
-0.7
3
59.5
45.2
Minor BPS
52.7
0.16
1.9
73.64
43

Associated Gene:

Gene:
AQR
Ensembl Gene ID:
ENSAPLG00000008144
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034119
23305909 - 23360084
54176
ENSAPLT00000032745
23305909 - 23360084
54176
ENSAPLT00000008533
23305229 - 23360084
54856