Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23342636_23343717_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23342636 - 23343717

Intron Length:

1082

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAAACCG

5'SS Class:

major

3'SS Sequence:

ATGCATCCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

CTTTTTTTGACT

Flanking Amino Acid:

YEKDFLLELLVSRHERRISQ

Intron Amino Acid Position:

411

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

1.1

42.1

Major BPS

90.4

0.7

90.2

19.3

Major PPT

67.4

0.39

0.9

63.6

38.5

Minor 5ss

31.8

-2.1

3.1

37.2

41.1

Minor BPS

75.2

0.88

1.1

85.97

34.5

Associated Gene:

Gene:

AQR

Ensembl Gene ID:

ENSAPLG00000008144

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032745

23305909 - 23360084

54176

ENSAPLT00000008533

23305229 - 23360084

54856

ENSAPLT00000034119

23305909 - 23360084

54176