Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23344415_23345218_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23344415 - 23345218

Intron Length:

804

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGTGT

5'SS Class:

strong_major

3'SS Sequence:

GGATCTTTTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTTAC

U12 Branch Point Sequence:

CTTACGTTCAGT

Flanking Amino Acid:

IHYDRITSLQRTAFAHFPEL

Intron Amino Acid Position:

342

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

72.8

39.1

Major BPS

66.4

0.41

1.1

57.4

41.4

Major PPT

71.8

0.49

0.9

65.9

40.6

Minor 5ss

37.8

-1.4

3.5

55.9

48.3

Minor BPS

-0.3

2.6

67.89

48.7

Associated Gene:

Gene:

AQR

Ensembl Gene ID:

ENSAPLG00000008144

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034119

23305909 - 23360084

54176

ENSAPLT00000032745

23305909 - 23360084

54176

ENSAPLT00000008533

23305229 - 23360084

54856