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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23349551_23350230_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23349551 - 23350230
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATGTTAC
5'SS Class:
major
3'SS Sequence:
TGTCTCATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TATGTCTCATTT
Flanking Amino Acid:
DEKMNEEARTQAYRERRFLS
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
65.1
35.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
77.2
0.61
0.8
74.8
34.8
Minor 5ss
48.8
-0.1
2.4
66.2
39.2
Minor BPS
48.6
-0
1.9
68.67
42.7

Associated Gene:

Gene:
AQR
Ensembl Gene ID:
ENSAPLG00000008144
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034119
23305909 - 23360084
54176
ENSAPLT00000032745
23305909 - 23360084
54176
ENSAPLT00000008533
23305229 - 23360084
54856