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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23350332_23350918_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23350332 - 23350918
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGCATA
5'SS Class:
major
3'SS Sequence:
TTTACCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTTGGTGAATT
Flanking Amino Acid:
SLPMWMALQPKRLEQELKKT
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
71.3
40.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
87.5
0.84
0.7
85
29.6
Minor 5ss
45.9
-0.4
2.9
67.6
43.1
Minor BPS
47
-0.1
2.5
72.16
45.3

Associated Gene:

Gene:
AQR
Ensembl Gene ID:
ENSAPLG00000008144
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034119
23305909 - 23360084
54176
ENSAPLT00000032745
23305909 - 23360084
54176
ENSAPLT00000008533
23305229 - 23360084
54856