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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23350988_23352980_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23350988 - 23352980
Intron Length:
1993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GACTTTCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTAATAAACA
Flanking Amino Acid:
LFLDHCFNSLEVDLIRSQVQ
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
74.6
31
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
71.2
0.48
1
65.9
39.5
Minor 5ss
45.7
-0.4
2.5
54.4
45.2
Minor BPS
50.6
0.02
2.1
69.45
42.6

Associated Gene:

Gene:
AQR
Ensembl Gene ID:
ENSAPLG00000008144
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034119
23305909 - 23360084
54176
ENSAPLT00000032745
23305909 - 23360084
54176
ENSAPLT00000008533
23305229 - 23360084
54856