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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23354555_23356842_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23354555 - 23356842
Intron Length:
2288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TGTCTCTTCACA
Flanking Amino Acid:
AIRKIMLLEFSQYLENYLWM
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
33.8
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
81.4
0.71
0.8
75.9
32.7
Minor 5ss
46.8
-0.3
3
64.4
47
Minor BPS
61.8
0.36
1.8
73.25
38.4

Associated Gene:

Gene:
AQR
Ensembl Gene ID:
ENSAPLG00000008144
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032745
23305909 - 23360084
54176
ENSAPLT00000008533
23305229 - 23360084
54856
ENSAPLT00000034119
23305909 - 23360084
54176