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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23356879_23357977_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23356879 - 23357977
Intron Length:
1099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TCTATGTTAATT
Flanking Amino Acid:
DVYTKEIVKSKFAIRKIMLL
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
89
0.88
0.6
88.7
20.6
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
56
0.27
2.1
75.63
41.8

Associated Gene:

Gene:
AQR
Ensembl Gene ID:
ENSAPLG00000008144
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008533
23305229 - 23360084
54856
ENSAPLT00000034119
23305909 - 23360084
54176
ENSAPLT00000032745
23305909 - 23360084
54176