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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23358019_23359134_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23358019 - 23359134
Intron Length:
1116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ACTTTTTGAATT
Flanking Amino Acid:
VKKKLCFDSKVIEDVYTKEI
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
74
0.54
0.7
69
25
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
62.3
0.47
1.4
74.22
37.3

Associated Gene:

Gene:
AQR
Ensembl Gene ID:
ENSAPLG00000008144
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034119
23305909 - 23360084
54176
ENSAPLT00000032745
23305909 - 23360084
54176
ENSAPLT00000008533
23305229 - 23360084
54856