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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23377143_23381904_R

Intron Information:

Intron Rank:
146424
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
23377143 - 23381904
Intron Length:
4762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGCTCCC
5'SS Class:
weak_major
3'SS Sequence:
TTTCTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.4
0.13
1.5
54.6
41
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.5
0.82
0.7
86
26.8
Minor 5ss
35
-1.7
3
45.9
42.2
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026121
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045837
23376865 - 23382749
5885