About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23380950_23381247_R

Intron Information:

Intron Rank:
146421
Intron Class:
major
Intron Phase:
Intron Coordinates:
23380950 - 23381247
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTCAG
5'SS Class:
major
3'SS Sequence:
TGCATCATAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
61.5
44.7
Major BPS
100
1.24
0.5
100
0
Major PPT
65.3
0.34
1
59.7
40.3
Minor 5ss
32.3
-2
3.1
37.1
41.7
Minor BPS
67.6
0.63
1.9
89.45
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026121
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022858
23380932 - 23383081
2150