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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23381323_23381904_R

Intron Information:

Intron Rank:
146417
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
23381323 - 23381904
Intron Length:
582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGCTCCC
5'SS Class:
weak_major
3'SS Sequence:
AACTTTTCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TGCAACCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.4
0.13
1.5
54.6
41
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
70.9
0.47
0.8
66.2
34.8
Minor 5ss
35
-1.7
3
45.9
42.2
Minor BPS
51
0.11
1.9
71.75
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026121
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019275
23376865 - 23383081
6217