Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2342915_2346879_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2342915 - 2346879

Intron Length:

3965

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTTTGGGAG

5'SS Class:

major

3'SS Sequence:

GATCTGGCCCTAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTCATTTTAATA

Flanking Amino Acid:

EGTRLFIVFFRELKIPYVRL

Intron Amino Acid Position:

709

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.1

0.43

1.2

57.8

41.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.16

46.9

41.2

Minor 5ss

-2.2

3.3

37.6

47.3

Minor BPS

66.7

0.52

1.2

70.89

Associated Gene:

Gene:

TRIM66

Ensembl Gene ID:

ENSAPLG00000004186

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004312

2323318 - 2353991

30674