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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23453988_23454075_R

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
23453988 - 23454075
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTACGCCTG
5'SS Class:
weak_major
3'SS Sequence:
TTTACACAAGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TCTTTCTGACTT
Flanking Amino Acid:
SSSASCASISLRNFQKTAMQ
Intron Amino Acid Position:
794

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.1
0.17
1.2
48
47.7
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
65.8
0.36
1
60.9
39.3
Minor 5ss
43.3
-0.7
3.4
65.8
45.3
Minor BPS
57.3
0.31
1.7
75.82
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007825
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008122
23417386 - 23615595
198210