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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23454301_23474697_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23454301 - 23474697
Intron Length:
20397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTGTG
5'SS Class:
major
3'SS Sequence:
GTTTCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
AGTTGTGTAATA
Flanking Amino Acid:
WQKKLKECKKVEDSETYNDV
Intron Amino Acid Position:
719

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
67.1
44.6
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
83.5
0.75
0.7
81.7
30.3
Minor 5ss
40.4
-1.1
3.5
57.3
47.4
Minor BPS
46.7
-0.2
2.3
61.75
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007825
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022070
23417321 - 23615595
198275
ENSAPLT00000019261
23417321 - 23606959
189639
ENSAPLT00000008122
23417386 - 23615595
198210