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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23474941_23522335_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23474941 - 23522335
Intron Length:
47395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCTTACTTACTG
Flanking Amino Acid:
SIGPYSQSIKVGDVLYCAGQ
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82.9
0.74
0.7
77.2
31.5
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
56.1
0.05
1.9
63.84
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007825
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022070
23417321 - 23615595
198275
ENSAPLT00000019261
23417321 - 23606959
189639
ENSAPLT00000008122
23417386 - 23615595
198210