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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2349788_2351383_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2349788 - 2351383
Intron Length:
1596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAATA
5'SS Class:
major
3'SS Sequence:
TTGGCTTCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTCTCAAAA
Flanking Amino Acid:
QYGLDDYDQKKCEKLVLSLF
Intron Amino Acid Position:
903

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
0.9
76.9
33.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.4
0.64
0.9
69.8
41.5
Minor 5ss
30.2
-2.3
3.2
39.2
46.2
Minor BPS
68.8
0.58
1.6
80.83
34.3

Associated Gene:

Gene:
TRIM66
Ensembl Gene ID:
ENSAPLG00000004186
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004312
2323318 - 2353991
30674