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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2351459_2352615_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2351459 - 2352615
Intron Length:
1157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTATTTTATTC
Flanking Amino Acid:
LPFHEPVSPLARHYYQIIKR
Intron Amino Acid Position:
928

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.5
0.73
0.9
77
36.5
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
52.7
0.07
1.6
62.95
37

Associated Gene:

Gene:
TRIM66
Ensembl Gene ID:
ENSAPLG00000004186
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004312
2323318 - 2353991
30674