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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23522511_23525077_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23522511 - 23525077
Intron Length:
2567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATTA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
AAAAATATAATT
Flanking Amino Acid:
VTEFDLCPPARVCVETLLPD
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
77.8
33.3
Major BPS
79
0.72
1
78.4
31.2
Major PPT
83.3
0.75
0.9
80.3
37.3
Minor 5ss
40.1
-1.1
3.4
55.5
48.7
Minor BPS
45.8
-0.2
1.7
59.61
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007825
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019261
23417321 - 23606959
189639
ENSAPLT00000008122
23417386 - 23615595
198210
ENSAPLT00000022070
23417321 - 23615595
198275